gatk-3.8/java
ebanks 43f1fb2380 Okay, finally done with VCF compression. Now:
1. Uses blocked gzip compression.
2. No more -bzip option available (since we can't compress to sdout).
3. Only file extensions that are compressed are .gz and .gzip.
4. No more need for CompressedVCFWriter.java



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4099 348d0f76-0448-11de-a6fe-93d51630548a
2010-08-24 16:36:54 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Okay, finally done with VCF compression. Now: 2010-08-24 16:36:54 +00:00
test Minor fixes for my last commit 2010-08-23 23:25:29 +00:00