gatk3的最后一个经典版本3.8

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Laura Gauthier 4373922ee6 Update GATK to work with latest htsjdk ValidationStringency was moved from htsjdk.samtools.SAMFileReader to htsjdk.samtools samtools find BAM index file method was also moved (and made public!)		2014-07-30 12:05:14 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Add diploid only support message to HaplotypeCaller	2014-07-29 17:05:36 -04:00
public	Update GATK to work with latest htsjdk	2014-07-30 12:05:14 -04:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00

The Genome Analysis Toolkit