ebanks 434e920da9 Oops, forgot to update integration tests ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3431 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-25 20:37:45 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Massive change to the indel realigner code. We now properly deal with soft-clipped reads. Also, improved left-alignment code.	2010-05-25 20:04:33 +00:00
test/org/broadinstitute/sting	Oops, forgot to update integration tests	2010-05-25 20:37:45 +00:00