aaron 7b39aa4966 Adding the VCF ROD. Also changed the VCF objects to much more user friendly. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1658 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-18 20:19:34 +00:00
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gatk	Adding the VCF ROD. Also changed the VCF objects to much more user friendly.	2009-09-18 20:19:34 +00:00
playground/gatk/walkers/varianteval	rod DBSNP had a bug where the reference wasn't calculated correctly under certain conditions. Fixed getRefBasesFWD and getRefSnpFWD so that they were more in line with getAltBasesFWD and getAltSnpFWD. Also updated Variant Eval tests to reflect this change.	2009-09-13 23:48:58 +00:00
utils	Adding the VCF ROD. Also changed the VCF objects to much more user friendly.	2009-09-18 20:19:34 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	initial VariantEvalWalker test. More to be added soon...	2009-09-09 01:02:04 +00:00