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CNV
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Fixed bug that required symbolic alleles to be padded with reference base and added integration test to test parsing and output of symbolic alleles
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2011-08-12 12:23:44 -04:00 |
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annotator
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Improved descriptions for the SnpEff annotations in the VCF header
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2011-08-17 16:09:10 -04:00 |
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beagle
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Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.
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2011-08-09 12:04:55 -04:00 |
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coverage
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Moving more tools over to the new rod system
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2011-08-10 13:42:35 -04:00 |
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diffengine
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Spelling fix requires md5 updates
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2011-08-26 07:40:44 -04:00 |
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fasta
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More updates to be consistent with the new rod syntax.
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2011-08-09 10:11:37 -04:00 |
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filters
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Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.
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2011-08-09 12:04:55 -04:00 |
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genotyper
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Fixing syntax of BQSR and UG performance tests.
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2011-08-11 17:04:09 -04:00 |
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indels
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Moving more tools over to the new rod system
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2011-08-10 13:42:35 -04:00 |
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phasing
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Update to new RodBinding system
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2011-08-11 17:54:16 -04:00 |
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qc
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Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.
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2011-08-09 12:04:55 -04:00 |
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recalibration
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Fixing syntax of BQSR and UG performance tests.
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2011-08-11 17:04:09 -04:00 |
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validation
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Continuing progress towards RodBinding 1.0
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2011-08-03 17:19:28 -04:00 |
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varianteval
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Updated VariantEvalIntegrationTest since there's a new column separating nMixed and nComplex in CountVariants
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2011-08-20 12:24:22 -04:00 |
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variantrecalibration
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Updating VQSR for new RodBinding syntax. Cleaning up indel specific parts of VQSR.
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2011-08-10 10:20:37 -04:00 |
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variantutils
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Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.
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2011-09-06 20:39:42 -04:00 |
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BAQIntegrationTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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ClipReadsWalkersIntegrationTest.java
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Swapped argument order but not MD5 order
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2011-08-19 16:55:56 -04:00 |
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PileupWalkerIntegrationTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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PrintReadsIntegrationTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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PrintReadsWalkerUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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