depristo 4304fc4862 Fixed up md5s ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6007 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-16 16:20:41 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Significant performance optimization for reduced reads due to better algorithm for including reads in the variable regions. Fixed a critical bug that actually produced multiple copies of the same read in the variable regions with this optimization as well. Scala exploration script updated as well.	2011-06-16 12:54:59 +00:00
test	Fixed up md5s	2011-06-16 16:20:41 +00:00