chartl 42e9987e69 Bug fix to GenotypeConcordance. AC metrics get instantiated based on number of eval samples; if Comp has more samples, we can see AC indeces outside the bounds of the array. ... Bug fix to LiftoverVariants - no barfing at reference sites. AlleleFrequencyComparison - local changes added to make sure parsing works properly Added HammingDistance annotation. Mostly useless. But only mostly. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4622 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-03 19:23:03 +00:00
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qscript	Bug fix to GenotypeConcordance. AC metrics get instantiated based on number of eval samples; if Comp has more samples, we can see AC indeces outside the bounds of the array.	2010-11-03 19:23:03 +00:00
src	Now that the user is required to set the java temp directory, it is safer for the LsfJobRunner to write to the java temp directory instead of the command directory.	2010-10-28 15:00:21 +00:00
test/org/broadinstitute/sting/queue	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00