Mark DePristo 42bf9adede Initial version of "fast" FragmentPileup code ... -- Uses mayOverlapRoutine in ReadUtils -- Attempts to be smart when doing overlap calculation, to avoid unnecessary allocations -- PileupElement now comparable (sorts on offset than on start) -- Caliper microbenchmark to assess performance		2011-10-22 21:36:37 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Initial version of "fast" FragmentPileup code	2011-10-22 21:36:37 -04:00
test	Initial version of "fast" FragmentPileup code	2011-10-22 21:36:37 -04:00