gatk3的最后一个经典版本3.8

Eric Banks 41f3da75d7 Implementation in VE was confusing 'variant' status vs. 'polymorphic' status. This led to issues because we now match types of eval and comp; specifically, subsetting a VC to a monomorphic sample can't change the 'variant' status of the VC (it's still a variant site or otherwise we'll never match the comps, which breaks GenotypeConcordance). CountVariants really got this wrong. Fixed. VE now passes all integration tests.		2011-08-12 02:22:44 -04:00
public	Implementation in VE was confusing 'variant' status vs. 'polymorphic' status. This led to issues because we now match types of eval and comp; specifically, subsetting a VC to a monomorphic sample can't change the 'variant' status of the VC (it's still a variant site or otherwise we'll never match the comps, which breaks GenotypeConcordance). CountVariants really got this wrong. Fixed. VE now passes all integration tests.	2011-08-12 02:22:44 -04:00
settings	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Fixing the javadoc/scaladoc targets in build.xml	2011-08-11 19:24:41 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00