aaron 96972c3a5c a fix for a bug Eric found: if your first call contains fewer samples than calls at other loci, your VCFHeader got setup incorrectly. ... Also moved a buch of Lists over to Sets for consistancy. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1859 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-16 04:57:50 +00:00
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org/broadinstitute/sting	a fix for a bug Eric found: if your first call contains fewer samples than calls at other loci, your VCFHeader got setup incorrectly.	2009-10-16 04:57:50 +00:00