Christopher Hartl 418d22b67e Merge branch 'master' of ssh://tin.broadinstitute.org/humgen/gsa-scr1/chartl/dev/unstable ... Conflicts: private/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IntronLossGenotyperV2.java		2011-12-19 10:59:18 -05:00
..
alignment	GATKSAMRecord refactor	2011-11-03 15:43:26 -04:00
analyzecovariates	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
commandline	A toString() method for IntervalBindings	2011-11-23 11:56:12 -05:00
gatk	Merge branch 'master' of ssh://tin.broadinstitute.org/humgen/gsa-scr1/chartl/dev/unstable	2011-12-19 10:59:18 -05:00
jna	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00
queue	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
utils	Merge branch 'master' of ssh://tin.broadinstitute.org/humgen/gsa-scr1/chartl/dev/unstable	2011-12-19 10:59:18 -05:00