gatk-3.8/java/src/org/broadinstitute/sting/gatk/executive
hanna ff798fe483 Reintroduce support for interval-based traversals.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@749 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-18 22:54:18 +00:00
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Accumulator.java Reintroduce support for interval-based traversals. 2009-05-18 22:54:18 +00:00
HierarchicalMicroScheduler.java Reintroduce support for interval-based traversals. 2009-05-18 22:54:18 +00:00
LinearMicroScheduler.java Reintroduce support for interval-based traversals. 2009-05-18 22:54:18 +00:00
MicroScheduler.java Reintroduce support for interval-based traversals. 2009-05-18 22:54:18 +00:00
OutputMerger.java Rename some key classes. 2009-05-01 22:01:04 +00:00
ReduceTree.java Sketch of hierarchical reduce process, with unit tests for some core classes. Requires breakout of inner classes, testing. 2009-04-29 20:26:16 +00:00
ShardTraverser.java Rename TraverseLociByReference to TraverseLoci to represent its new function. 2009-05-18 01:31:57 +00:00
TraversalEngineExecutive.java New type hierarchy for Traversals. There's a new package to hold them (traversals) and an easy system to create new ones. We are now one step closer to supporting the execution manager (a totally non-functional version is included here) that actually executes walkers in parallel using N threads. 2009-03-27 15:40:45 +00:00
TreeReducer.java N-way parallelism. Works for small test cases. Untested for large test cases. 2009-05-01 19:34:09 +00:00