Mark DePristo 5ad9a98a15 Minor bugfixes / consistency fixes to filter strings of Genotypes and AC/AF annotations ... -- GenotypeBuilder now sorts the list of filter strings so that the output is in a consistent order -- calculateChromosomeCounts removes the AC/AF fields entirely when there are no alt alleles, to be on VCF spec for A defined info field values		2012-06-30 11:22:49 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Minor bugfixes / consistency fixes to filter strings of Genotypes and AC/AF annotations	2012-06-30 11:22:49 -04:00
test	Added check in VariantContext.validate to ensure that getEnd() == END value when present	2012-06-30 11:22:48 -04:00