Mark DePristo 40bc7d6a9c Bugfix for ReferenceConfidenceModel ... -- In the case where there's some variation to assembly and evaluate but the resulting haplotypes don't result in any called variants, the reference model would exception out with "java.lang.IllegalArgumentException: calledHaplotypes must contain the refHaplotype". Now we detect this case and emit the standard no variation output. -- [delivers #54625060]		2013-08-06 16:00:32 -04:00
..
src/org/broadinstitute/sting	Bugfix for ReferenceConfidenceModel	2013-08-06 16:00:32 -04:00
test/org/broadinstitute/sting	Bugfix for ReferenceConfidenceModel	2013-08-06 16:00:32 -04:00