gatk3的最后一个经典版本3.8

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Mark DePristo 40bc7d6a9c Bugfix for ReferenceConfidenceModel -- In the case where there's some variation to assembly and evaluate but the resulting haplotypes don't result in any called variants, the reference model would exception out with "java.lang.IllegalArgumentException: calledHaplotypes must contain the refHaplotype". Now we detect this case and emit the standard no variation output. -- [delivers #54625060]		2013-08-06 16:00:32 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Bugfix for ReferenceConfidenceModel	2013-08-06 16:00:32 -04:00
public	Better caching for the HaplotypeCaller	2013-08-02 01:27:29 -04:00
settings	Rev picard to get optimized tribble feature reads	2013-08-02 10:31:36 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	build.xml: make ant -p output only important build targets	2013-07-19 14:35:00 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit