Mark DePristo 4095a9ef32 Bugfixes for AssessNA12878 ... -- Refactor initialization routine into BadSitesWriter. This now adds the GQ and DP genotype header lines which are necessarily if the input VCF doesn't have proper headers -- GATKVariantContextUtils subset to biallelics now tolerates samples with bad GL values for multi-allelics, where it just removes the PLs and issues a warning.		2013-02-28 10:35:06 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bugfixes for AssessNA12878	2013-02-28 10:35:06 -05:00
test	Added better error message for BAMs with bad read groups.	2013-02-27 16:02:56 -05:00