Mark DePristo 46e7370128 this.allele, getAlleles(), and getAltAlleles() now return List not set ... -- Changes associated code throughout the codebase -- Updated necessary (but minimal) UnitTests to reflect new behavior -- Much better makealleles() function in VC.java that enforces a lot of key constraints in VC		2011-10-09 11:45:55 -07:00
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AlleleUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenotypeLikelihoodsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenotypeUnitTest.java	Framework for genotype unit test	2011-09-24 08:56:45 -04:00
VCFJarClassLoadingUnitTest.java	More reliable way of finding the Tribble jar.	2011-10-07 11:19:29 -04:00
VariantContextIntegrationTest.java	More tools moved over. Fixed the VariantContextIntegrationTest which was not useful because the md5s were all removed. In the future, instead of removing md5s (putting it in 'parameterization' mode), you should instead use @Test{enabled=false} since it's easier to track.	2011-08-10 14:24:40 -04:00
VariantContextUnitTest.java	this.allele, getAlleles(), and getAltAlleles() now return List not set	2011-10-09 11:45:55 -07:00
VariantContextUtilsUnitTest.java	this.allele, getAlleles(), and getAltAlleles() now return List not set	2011-10-09 11:45:55 -07:00
VariantJEXLContextUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00