gatk3的最后一个经典版本3.8

Mark DePristo 40431890be -- BCF2 is now a reference dependent codec so it can initialize the contigs in the case where the file doesn't have contigs in it ... -- BCF2 writer can now work without the contig lines being in the header -- Made GenomeLocParser a final class		2012-05-24 10:57:06 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	-- BCF2 is now a reference dependent codec so it can initialize the contigs in the case where the file doesn't have contigs in it	2012-05-24 10:57:06 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Individual VariantContextWriters are now package protected	2012-05-24 10:57:00 -04:00
ivy.xml	Not Nexus. Need new name. Navel?	2012-05-24 10:11:58 -04:00