48 lines
1.6 KiB
Java
48 lines
1.6 KiB
Java
package org.broadinstitute.sting.gatk.refdata;
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import org.broadinstitute.sting.BaseTest;
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import org.junit.Assert;
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import org.junit.Test;
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import java.util.ArrayList;
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import java.util.List;
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/**
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*
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* @author aaron
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*
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* Class ReferenceOrderedDataUnitTest
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*
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* some functionality to test parts of the reference ordered data system that I've added. This is by NO MEANS
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* a complete test suite, but additions would be extremely welcome
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*/
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public class ReferenceOrderedDataUnitTest extends BaseTest {
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@Test
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public void extractRodsFromFileTest() {
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String file = validationDataLocation + "testRODFileImpl.csv";
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List<String> lst = new ArrayList<String>();
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ReferenceOrderedData.extractRodsFromFile(lst,file);
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Assert.assertEquals(6,lst.size());
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int index = 0;
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for (String entry: lst) {
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String first = entry.subSequence(0,entry.indexOf(",")).toString();
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Assert.assertTrue(first.equals("rod" + String.valueOf(++index)));
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}
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}
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@Test
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public void extractRodsFromMultiFileTest() {
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String file = validationDataLocation + "testRODFileImpl.csv";
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String file2 = validationDataLocation + "testRODFileImpl2.csv";
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List<String> lst = new ArrayList<String>();
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ReferenceOrderedData.extractRodsFromFile(lst,file);
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ReferenceOrderedData.extractRodsFromFile(lst,file2);
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Assert.assertEquals(12,lst.size());
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int index = 0;
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for (String entry: lst) {
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String first = entry.subSequence(0,entry.indexOf(",")).toString();
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Assert.assertTrue(first.equals("rod" + String.valueOf(++index)));
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}
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}
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}
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