Scott Frazer 3ffba77656 Revert "initial cancer pipeline with mutations and partial indel support" ... This reverts commit 4a2e5b1fcc3ad53dbb26d43eed1220b0257e9901.		2012-10-04 11:37:54 -04:00
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R	Fix for missing formatter in R 2.15	2012-08-17 11:49:02 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Merge branch 'master' of ssh://gsa2.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable	2012-08-30 09:19:35 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	…
scala	Revert "initial cancer pipeline with mutations and partial indel support"	2012-10-04 11:37:54 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00