ebanks 3f75fc4e83 Unfortunately, because BWA occasionally outputs crazy reads, we need ... to make sure not to have an ArrayIndexOutOfBoundsException thrown. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@297 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-06 03:51:35 +00:00
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src/org/broadinstitute/sting	Unfortunately, because BWA occasionally outputs crazy reads, we need	2009-04-06 03:51:35 +00:00
test/org/broadinstitute/sting/utils/cmdLine	Fix argument parser test case.	2009-03-27 16:05:18 +00:00