ebanks 3f6e44dc71 Updated recalibrator and cleaner to output full command-lines in the bam header ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3972 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-08 04:39:18 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Updated recalibrator and cleaner to output full command-lines in the bam header	2010-08-08 04:39:18 +00:00
test	Added a generic method for returning the complete command-line used when calling a walker, to be used in the bam/vcf headers. As requested, every possible engine/walker argument is included. I've added it to the Unified Genotyper output, so people can try it out and let me know what they think. Something that needs to be discussed in group meeting: what happens when we merge VCFs? Do we keep all of the command-lines?	2010-08-08 03:53:07 +00:00