Mark DePristo df90597bfc Performance optimizations and caliper benchmarking code for consolidateCigar ... -- Now that this function is used in the core of LIBS it needed some basic optimizations, which are now complete, pass all unit tests. -- Added caliper benchmark for AlignmentUtils to assess performance (showing new version is 3x-10x faster) -- Remove unused import in ReadStateManager		2013-04-24 11:36:43 -04:00
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net/sf	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
org/broadinstitute/sting	Performance optimizations and caliper benchmarking code for consolidateCigar	2013-04-24 11:36:43 -04:00