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VectorPairHMM
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Do not use logger, write to stderr, could not get the correct logger dependency in pom.xml
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2015-01-06 10:32:11 -05:00 |
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c
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After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
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2014-05-19 17:36:41 -04:00 |
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chainFiles
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The contig is named MT not M in b36. Delivers PT68890442.
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2014-04-08 10:03:47 -04:00 |
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doc
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Refactored maven directories and java packages replacing "sting" with "gatk".
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2014-05-19 17:36:39 -04:00 |
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external-example
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Added introductory CRAM support.
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2015-01-26 14:47:39 -03:00 |
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gatk-engine
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corrected logical expression in MateSameStrandFilter
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2015-02-12 12:21:44 -05:00 |
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gatk-queue
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Faster builds, with updates to documentation generation.
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2014-11-05 00:32:23 +08:00 |
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gatk-queue-extensions-generator
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Added optional element "includeUnmapped" to the PartitionBy annotation
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2015-01-31 15:47:57 -05:00 |
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gatk-queue-extensions-public
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Added optional element "includeUnmapped" to the PartitionBy annotation
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2015-01-31 15:47:57 -05:00 |
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gatk-root
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Bumping HTSJDK version to pickup a bug fix for CRAM.
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2015-01-26 14:47:39 -03:00 |
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gatk-tools-public
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GenotypeConcordance: monomorphic sites in truth are no longer called "Mismatching Alleles" when the comp genotype has an alternate allele
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2015-02-07 15:54:38 -05:00 |
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gatk-utils
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Merge pull request #807 from broadinstitute/rhl_handle_cigar
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2015-02-01 11:09:52 -05:00 |
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gsalib
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Updated gsalib version to 2.1 for resubmitting with updated license to CRAN
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2014-12-09 17:07:48 -05:00 |
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java/config
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Refactored maven directories and java packages replacing "sting" with "gatk".
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2014-05-19 17:36:39 -04:00 |
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package-tests
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Split all imports of tools|engine from utils, and all tools from engine.
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2014-10-24 20:59:46 +08:00 |
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perl
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Fixing the liftover script to not require strict VCF header validation.
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2013-11-07 09:02:17 -05:00 |
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repo
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Bumping HTSJDK version to pickup a bug fix for CRAM.
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2015-01-26 14:47:39 -03:00 |
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src/main
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Added faster built executable, non-packaged jars.
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2014-11-05 00:30:46 +08:00 |
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pom.xml
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Update pom versions to mark the start of GATK 3.4 development
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2014-10-23 22:31:44 -04:00 |
3ee0311fdb