Mark DePristo 3e93f246f7 Support for sample sets in AssignSomaticStatus ... -- Also cleaned up SampleUtils.getSamplesFromCommandLine() to return a set, not a list, and trim the sample names.		2011-09-19 11:40:45 -04:00
..
R	Fixing units in queue job report Gantt plots	2011-09-12 09:01:34 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	Support for sample sets in AssignSomaticStatus	2011-09-19 11:40:45 -04:00
packages	Removing some old cruft from the packages dir. Updating AnalyzeCovariates to include all Covariates.	2011-09-12 15:09:25 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Fixed issue reported by chartl where cloned functions lost tags on @Inputs.	2011-09-16 12:46:07 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00