Mark DePristo a6b3497eac Fixes GSA-515 Nanoscheduler GSA-577 -nt and -nct together appear to not close resources properly ... -- Fixes monster bug in the way that traversal engines interacted with the NanoScheduler via the output tracker. -- ThreadLocalOutputTracker is now a ThreadBasedOutputTracker that associates via a map from a master thread -> the storage map. Lookups occur by walking through threads in the same thread group, not just the thread itself (TBD -- should have a map from ThreadGroup instead) -- Removed unnecessary debug statement in GenomeLocParser -- nt and nct officially work together now		2012-09-24 14:15:35 -04:00
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net/sf	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
org/broadinstitute/sting	Fixes GSA-515 Nanoscheduler GSA-577 -nt and -nct together appear to not close resources properly	2012-09-24 14:15:35 -04:00