19 lines
1.1 KiB
XML
19 lines
1.1 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<package name="LocalRealignmentAroundIndels">
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<executable name="LocalRealignmentAroundIndels">
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<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
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<resource-bundle file="StingText.properties" />
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<dependencies>
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<!-- Local realignment around indels -->
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<class name="org.broadinstitute.sting.gatk.walkers.indels.CleanedReadInjector" />
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<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelIntervalWalker" />
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<class name="org.broadinstitute.sting.gatk.walkers.indels.IntervalCleanerWalker" />
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<class name="org.broadinstitute.sting.gatk.walkers.indels.IntervalMergerWalker" />
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<class name="org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker" />
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<class name="org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker" />
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<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperWalker" />
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<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperV2Walker" />
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</dependencies>
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</executable>
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</package>
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