gatk3的最后一个经典版本3.8

Joel Thibault 3e52ce5fa8 Remove DepthOfCoverage.java because it is no longer public ... - Move Pileup.java and PrintReads.java to their new homes		2013-01-10 11:45:38 -05:00
licensing	License Parser and update all license scripts	2013-01-09 15:56:50 -05:00
protected/java	Adding new command line argument requested on the forum to control the maximum number of haplotypes that are sent forward for genotyping. In the presence of a large degree of heterozygosity the current algorithm breaks down and so this argument would need to be increased.	2013-01-09 15:54:02 -05:00
public	Remove DepthOfCoverage.java because it is no longer public	2013-01-10 11:45:38 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00