kshakir 3e3ff4a9e7 Bam gathering passes on the compression_level and the create_index flag to MergeSamFiles. ... VCF gathering passes on the no_header and sites_only flags to CombineVariants. Fixed deletion of gathered log files. Although they are intermediate and do not need to be re-run if not present, they should not be deleted. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5508 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-25 03:58:38 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Bam gathering passes on the compression_level and the create_index flag to MergeSamFiles.	2011-03-25 03:58:38 +00:00
test	... and the corresponding integration test update	2011-03-23 01:58:07 +00:00