gatk-3.8/scala/qscript
kshakir 3e0a722672 MFCP waits for other pipelines to finish by using the previous log file of one pipeline as virtual input to the next pipeline.
Using the name of the yaml in the log file name instead of each writing each to "queue.out" so that two yamls can run from the same directory without creating cycles in the graph.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5318 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-25 17:51:01 +00:00
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core the data processing pipeline needs more memory... 2011-02-24 17:22:58 +00:00
examples Moved the maximum number of intervals check from FCP to the Queue core so that scatter gather will no longer blow up if you specify a scatter count that is too high. 2011-01-28 23:33:58 +00:00
lib Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires. 2010-12-15 03:33:36 +00:00
oneoffs the data processing pipeline needs more memory... 2011-02-24 17:22:58 +00:00
playground MFCP waits for other pipelines to finish by using the previous log file of one pipeline as virtual input to the next pipeline. 2011-02-25 17:51:01 +00:00