3e01a76590
-- Added a true base class that only does truly common tasks (like manage call logging) -- This base class provides the only public method (getLog10PNonRef) and calls into a protected compute function that's abstract -- Split ExactAF into superclass ExactAF with common data structures and two subclasses: DiploidExact and GeneralPloidyExact -- Added an abstract reduceScope function that manages the simplification of the input VariantContext in the case where there are too many alleles or other constraints require us to only attempt a smaller computation -- All unit tests pass |
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| protected/java | ||
| public | ||
| settings | ||
| .gitignore | ||
| build.xml | ||
| ivy.xml | ||