Laura Gauthier 3dc68732fb Little changes to M2 code and docs ... Make MQ threshold a parameter (compare to M1 by setting to zero) Add logic for multiple alternate alleles in tumor Exclude MQ0 normal reads from normal LOD calculation Fix path errors in Dream_Evaluations.md Move M2 eval scripts out of walkers package so they run		2015-08-27 15:31:27 -04:00
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src	Little changes to M2 code and docs	2015-08-27 15:31:27 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.5 development	2015-05-15 00:44:54 -04:00