gatk3的最后一个经典版本3.8

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Laura Gauthier 3dc68732fb Little changes to M2 code and docs Make MQ threshold a parameter (compare to M1 by setting to zero) Add logic for multiple alternate alleles in tumor Exclude MQ0 normal reads from normal LOD calculation Fix path errors in Dream_Evaluations.md Move M2 eval scripts out of walkers package so they run		2015-08-27 15:31:27 -04:00
licensing	Updated licenses for 2015	2015-08-06 15:23:11 -04:00
protected	Adding Static Binning to BQSR	2015-08-24 13:36:17 -04:00
public	Little changes to M2 code and docs	2015-08-27 15:31:27 -04:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.5 development	2015-05-15 00:44:54 -04:00

The Genome Analysis Toolkit