3dbb86b052
Problem ------ Diagnose Targets identifies holes in the coverage of a targetted experiment, but it only reports them doesn't list the actual missing loci Solution ------ This commit implements an optional intervals file output listing the exact loci that did not pass filters Itemized changes -------------- * Cache callable statuses (to avoid recalculation) * Add functionality to output missing intervals * Implement new tool to qualify the missing intervals (QualifyMissingIntervals) by gc content, size, type of missing coverage and origin (coding sequence, intron, ...) |
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| gatk | ||
| utils | ||
| package-info.java | ||