carneiro 355be57539 fixing the pipeline so that it still works while I'm adding support for BWA. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5921 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-02 19:32:28 +00:00
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qscript	fixing the pipeline so that it still works while I'm adding support for BWA.	2011-06-02 19:32:28 +00:00
src/org/broadinstitute/sting	Updated GridEngineJobRunner to return status RUNNING instead of PENDING when a job has been sent to GridEngine, even if it hasn't started.	2011-05-25 17:16:44 +00:00
test/org/broadinstitute/sting/queue	Minor update so the debug messages don't show temp files as chromosome 208799060637697164972	2011-05-26 22:56:33 +00:00