Eric Banks 5f5edeca63 Reverting move of BQSR tests to public, as per DR's email		2012-07-19 10:02:05 -04:00
..
exampleBAM.bam	…
exampleBAM.bam.bai	…
exampleBAM.simple.bai	…
exampleBAM.simple.bam	…
exampleDBSNP.vcf	…
exampleFASTA-3contigs.fasta	…
exampleFASTA-combined.fasta	…
exampleFASTA-windows.fasta	…
exampleFASTA.dict	…
exampleFASTA.fasta	…
exampleFASTA.fasta.amb	…
exampleFASTA.fasta.ann	…
exampleFASTA.fasta.bwt	…
exampleFASTA.fasta.fai	…
exampleFASTA.fasta.pac	…
exampleFASTA.fasta.rbwt	…
exampleFASTA.fasta.rpac	…
exampleFASTA.fasta.rsa	…
exampleFASTA.fasta.sa	…
exampleGATKReport.eval	…
exampleGATKReportv1.tbl	…
exampleGATKReportv2.tbl	…
exampleGRP.grp	Changing the logic of the -standard argument; the way it stands currently one can never turn off the cycle or context covariates. Now they are on by default and users must opt out of them to turn them off.	2012-07-04 00:21:21 -04:00
exampleNORG.bam	…
exampleNORG.bam.bai	…
testfile.sam	Adding Unit Tests to cover the exception catching for Picard errors: because we are using String matching, we want to ensure that we know if/when the exception text changes underneath us.	2012-07-18 21:48:58 -04:00