Mark DePristo 16276f81a1 BCF2 with support symbolic alleles ... -- refactored allele clipping / padding code into VCFAlleleClipping class, and added much needed docs and TODOs for methods dev guys -- Added real unit tests for (some) clipping operations in VCFUtilsUnitTest		2012-06-30 11:22:48 -04:00
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writer	BCF2 cleanup	2012-06-26 15:28:33 -04:00
AlleleUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenotypeLikelihoodsUnitTest.java	Bugfixes to G count types in VCF header	2012-06-26 15:28:34 -04:00
GenotypeUnitTest.java	Genotype filters are now just Strings, not Set<String>	2012-06-30 11:22:47 -04:00
GenotypesContextUnitTest.java	Efficient Genotype object Intermediate commit	2012-06-14 16:42:24 -04:00
VCFJarClassLoadingUnitTest.java	Don't try to share BCF2 yet	2012-05-24 10:57:06 -04:00
VariantContextBenchmark.java	Cleanup Genotypes	2012-06-14 16:42:36 -04:00
VariantContextTestProvider.java	BCF2 with support symbolic alleles	2012-06-30 11:22:48 -04:00
VariantContextUnitTest.java	Add unit tests for VariantContextBuilder.rmAttribute() and .attribute()	2012-06-25 12:05:04 -04:00
VariantContextUtilsUnitTest.java	Finalizing new Genotype object and associated routines	2012-06-14 16:42:25 -04:00
VariantJEXLContextUnitTest.java	Killing the final versions of old new VariantContext interface	2011-11-18 21:32:43 -05:00