Valentin Ruano-Rubio 3cdeab6e9e GenotypingEngines and walkers now use AFCalc(ulator) providers rathern than instanciate their own (fixed) calculators directly. ... Changes: ------- * GenotypingEngine uses now a AFCalc provider instead of its own thread-local with one-time initialized and fixed AF calculator. * All walkers that use a GenotypingEngine now are passing the appropiate AF calculator provider. For now most just use a fix calculator (FixedAFCalculatorProvider) except GenotypeGVCFs as this one now can cope with mixture of ploidies failing-over to a general-ploidy calculator when the preferred implementation is not capable to handle a site's analysis.		2014-09-12 14:25:09 -04:00
..
src	GenotypingEngines and walkers now use AFCalc(ulator) providers rathern than instanciate their own (fixed) calculators directly.	2014-09-12 14:25:09 -04:00
pom.xml	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00