Mark DePristo 3c476a92a2 Add dummy functionality (currently throws an error) to allow HC to include unmapped reads during assembly and calling		2013-01-16 16:25:36 -05:00
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src/org/broadinstitute/sting	Add dummy functionality (currently throws an error) to allow HC to include unmapped reads during assembly and calling	2013-01-16 16:25:36 -05:00
test/org/broadinstitute/sting	Massive expansion of ActiveRegionTraversal unit tests, resulting in several bugfixes to ART	2013-01-16 15:30:00 -05:00