chartl 3c1bf40a45 QScript for scatter-gathering regional association (not quite as easy as using the built-in extension, due to the multiplexer). Currently does not work due to something I'm missing re: scatter gather class, this commit is an interim one. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5500 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-23 19:42:29 +00:00
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carneiro	documentation changes to agree with the wiki	2011-03-22 21:48:49 +00:00
chartl	QScript for scatter-gathering regional association (not quite as easy as using the built-in extension, due to the multiplexer). Currently does not work due to something I'm missing re: scatter gather class, this commit is an interim one.	2011-03-23 19:42:29 +00:00
delangel	Script for calling indels in all phase 1 samples - VQSR part still needs work but raw calling is done	2011-01-22 14:07:10 +00:00
depristo	BeagleOutputToVCF now accepts an option to keep monomorphic sites. This is useful to genotype a single sample, where having AC=0 just means that the sample is hom-ref at the site.	2011-03-18 03:08:38 +00:00
fromer	Some minor updates to fully utilize the functionality of reduceByInterval	2011-03-09 20:38:08 +00:00
hanna	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
kshakir	Removed deprecated getDbsnpFile.	2011-02-08 21:12:15 +00:00
rpoplin	not useful	2011-03-15 22:47:55 +00:00
QTools.q	Generalized association is now working. Output is in a horrific format. Implementation of T-testing. Improvements are to look for classes dynamically (a la VariantEval/VariantAnnotator), beautify output, and do optimizations where they exist.	2011-03-01 01:23:37 +00:00