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gatk-3.8/protected/java/src/org/broadinstitute/sting/utils
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Valentin Ruano-Rubio 5db520c6fa Fixed issue > 0 log likelihoods using GraphBased likelihood engine reported by Mauricio 
Added some integration test to check on the fix
 		2013-12-13 11:19:57 -05:00
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collections Adding Graph-based likelihood ratio calculation to HC 2013-12-02 19:37:19 -05:00
gvcf Bugfix for hom ref records that aren't GVCF blocks. 2013-09-29 19:19:26 -04:00
haplotype Adding Graph-based likelihood ratio calculation to HC 2013-12-02 19:37:19 -05:00
haplotypeBAMWriter Adding Graph-based likelihood ratio calculation to HC 2013-12-02 19:37:19 -05:00
pairhmm Fixed issue > 0 log likelihoods using GraphBased likelihood engine reported by Mauricio 2013-12-13 11:19:57 -05:00
recalibration Adding ability to use Ryan's PCR error modeling to the Haplotype Caller. 2013-08-16 01:53:04 -04:00
sam Adding Graph-based likelihood ratio calculation to HC 2013-12-02 19:37:19 -05:00
SequenceComplexity.java Adding Graph-based likelihood ratio calculation to HC 2013-12-02 19:37:19 -05:00