Yossi Farjoun 25fa25b618 Added option to validate gvcf (for ValidateVariants) (#1379) ... * with option --gvcf CLP will now put extra checks that a gvcf must adhere to (existance of <NON_REF> allele at every variant, and that the variants in total cover the entire requested intervals, or the whole genome if no intervals have been specified) * works on gvcf produced by HC when using either GVCF or BP_RESOLUTION mode * added positive and negative tests		2016-05-26 06:42:45 -04:00
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main/java/org/broadinstitute/gatk/tools	Added option to validate gvcf (for ValidateVariants) (#1379)	2016-05-26 06:42:45 -04:00
test/java/org/broadinstitute/gatk/tools	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00