Mauricio Carneiro 3b6e43b7c4 Use reads that span multiple intervals ... * RR will now compress reads that span across multiple intervals correctly and output them in the correct order. * Fixed bug in getReadCoordinateForReferenceCoordinate where if the requested reference coordinate fell inside a deletion in the read the read would be clipped up to one element past the deletion.		2011-09-27 18:39:06 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Use reads that span multiple intervals	2011-09-27 18:39:06 -04:00
test	Refactored reduced read utilities	2011-09-26 12:58:31 -04:00