zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/public/testdata
History
Eric Banks de56134579 Fixed up and refactored what seems to be a useful private tool to create simulated reads around a VCF. 
It didn't completely work before (it was hard-coded for a particular long-lost data set) but it should work now.
Since I thought that it might prove useful to others, I moved it to protected and added integration tests.

GERALDINE: NEW TOOL ALERT!
 		2014-01-15 13:49:31 -05:00
..
exampleBAM.bam PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.bam.bai PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.simple.bai Testdata for diffObjects. 2011-07-18 10:47:03 -04:00
exampleBAM.simple.bam Testdata for diffObjects. 2011-07-18 10:47:03 -04:00
exampleDBSNP.vcf PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleDBSNP.vcf.idx Somehow the index of exampleDBSNP.vcf was missing 2013-05-28 15:29:43 -04:00
exampleFASTA-3contigs.fasta Adding as many test data files into public/testdata as possible 2012-05-24 10:58:30 -04:00
exampleFASTA-combined.fasta Adding as many test data files into public/testdata as possible 2012-05-24 10:58:30 -04:00
exampleFASTA-windows.fasta Adding as many test data files into public/testdata as possible 2012-05-24 10:58:30 -04:00
exampleFASTA.dict Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
exampleFASTA.fasta Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
exampleFASTA.fasta.amb Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.ann Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.bwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.fai Revert changes to exampleFASTA.fasta.fai for now to get tests passing again 2013-05-02 12:59:20 -04:00
exampleFASTA.fasta.pac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rbwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rpac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rsa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.sa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleGATKReport.eval Adding as many test data files into public/testdata as possible 2012-05-24 10:58:30 -04:00
exampleGATKReportv1.tbl Adding as many test data files into public/testdata as possible 2012-05-24 10:58:30 -04:00
exampleGATKReportv2.tbl Adding as many test data files into public/testdata as possible 2012-05-24 10:58:30 -04:00
exampleGRP.grp Updating the exampleGRP.grp test file 2013-04-13 09:07:13 -04:00
exampleINTERVAL.intervals Walker to create a fastq file from an interval list 2013-06-29 11:24:16 -04:00
exampleNORG.bam Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
exampleNORG.bam.bai Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
forSimulation.vcf Fixed up and refactored what seems to be a useful private tool to create simulated reads around a VCF. 2014-01-15 13:49:31 -05:00
forSimulation.vcf.idx Fixed up and refactored what seems to be a useful private tool to create simulated reads around a VCF. 2014-01-15 13:49:31 -05:00
testfile.sam Adding Unit Tests to cover the exception catching for Picard errors: because we are using String matching, we want to ensure that we know if/when the exception text changes underneath us. 2012-07-18 21:48:58 -04:00