Eric Banks de56134579 Fixed up and refactored what seems to be a useful private tool to create simulated reads around a VCF. ... It didn't completely work before (it was hard-coded for a particular long-lost data set) but it should work now. Since I thought that it might prove useful to others, I moved it to protected and added integration tests. GERALDINE: NEW TOOL ALERT!		2014-01-15 13:49:31 -05:00
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java	Fixed up and refactored what seems to be a useful private tool to create simulated reads around a VCF.	2014-01-15 13:49:31 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00