Mark DePristo 3b67aa8aee Final edge case bug fixes to QualityUtil routines ... -- log10 functions in QualityUtils allow -Infinity to allow log10(0.0) values -- Fix edge condition of log10OneMinusX failing with Double.MIN_VALUE -- Fix another edge condition of log10OneMinusX failing with a small but not min_value double		2013-02-16 07:31:38 -08:00
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commandline	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
gatk	Merge pull request #31 from broadinstitute/yf_fast_BAM_index_traversal	2013-02-15 09:12:32 -08:00
jna	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
utils	Final edge case bug fixes to QualityUtil routines	2013-02-16 07:31:38 -08:00
BaseTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
ExampleToCopyUnitTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
MD5DB.java	Encrypt GATK AWS keys using the GATK private key, and decrypt as needed as a resource when uploading to AWS logs	2013-01-30 16:42:23 -05:00
MD5Mismatch.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
StingTextReporter.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java	Extend default timeout to 20 minutes	2013-02-13 17:43:40 -08:00
WalkerTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00