gatk-3.8/java
ebanks 3b5673d967 1. Removed -all; by default all modules are used; use -none for no modules.
2. Don't make dbsnp track be a comp by default (to cut back on output). Please let me know if someone wants this back for some reason.
3. Cleaned up dbsnp module output to print the right numbers.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3220 348d0f76-0448-11de-a6fe-93d51630548a
2010-04-21 02:46:42 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting 1. Removed -all; by default all modules are used; use -none for no modules. 2010-04-21 02:46:42 +00:00
test/org/broadinstitute/sting 1. Removed -all; by default all modules are used; use -none for no modules. 2010-04-21 02:46:42 +00:00