gatk-3.8/java/test/org/broadinstitute/sting
hanna ef546868bf Pooling of unmapped reads -- improves runtime of files with tons of unmapped reads by an order of magnitude.
Desperately needs cleanup.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1080 348d0f76-0448-11de-a6fe-93d51630548a
2009-06-23 23:48:06 +00:00
..
gatk Pooling of unmapped reads -- improves runtime of files with tons of unmapped reads by an order of magnitude. 2009-06-23 23:48:06 +00:00
playground/gatk/walkers/indels Aaron: 1, GenomeLoc: 0. I changed our GenomeLoc class, seperating the creation of a genome loc (with the reference setup) to a parser class. GenomeLoc now just represents the actual genomic postion. The constructors are now package-protected (to enforce using the parser), but we may want to expose some constructors in the future. 2009-06-22 14:39:41 +00:00
utils Aaron: 1, GenomeLoc: 0. I changed our GenomeLoc class, seperating the creation of a genome loc (with the reference setup) to a parser class. GenomeLoc now just represents the actual genomic postion. The constructors are now package-protected (to enforce using the parser), but we may want to expose some constructors in the future. 2009-06-22 14:39:41 +00:00
BaseTest.java Added some code to change the instrumentation for tests. 2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java fixed a bunch of comments and license headers. 2009-06-10 14:10:46 +00:00