Eric Banks 3af3834d50 Fixing 2 bugs in the SAMRecord printing argument descriptor code (as reported by Kristian): ... * For some reason, the original implementor decided to use Booleans instead of booleans and didn't always check for null so we'd occasionally get a NPE. Switched over to booleans. * We'd also generate a NPE if SAMRecord writing specific arguments (e.g. --simplifyBAM) were used while writing to sdout.		2012-05-18 11:55:41 -04:00
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R	Add warning message about ratios in variantQCreport, give ratio for MAF > 10%	2012-04-25 12:22:32 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
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java	Fixing 2 bugs in the SAMRecord printing argument descriptor code (as reported by Kristian):	2012-05-18 11:55:41 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	build system overhaul	2012-05-17 15:16:29 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Removed old GATKReport code and moved the new stuff in its place.	2012-05-18 01:44:31 -04:00
testdata	Extensive refactoring of the GATKReports. This was a beast.	2012-05-18 01:11:26 -04:00