gatk3的最后一个经典版本3.8

Eric Banks 3af3834d50 Fixing 2 bugs in the SAMRecord printing argument descriptor code (as reported by Kristian): ... * For some reason, the original implementor decided to use Booleans instead of booleans and didn't always check for null so we'd occasionally get a NPE. Switched over to booleans. * We'd also generate a NPE if SAMRecord writing specific arguments (e.g. --simplifyBAM) were used while writing to sdout.		2012-05-18 11:55:41 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Fixing 2 bugs in the SAMRecord printing argument descriptor code (as reported by Kristian):	2012-05-18 11:55:41 -04:00
settings	Rev. tribble to v101 with another putative open file leak fix	2012-05-04 15:40:41 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	build system overhaul	2012-05-17 15:16:29 -04:00
ivy.xml	build system overhaul	2012-05-17 15:16:29 -04:00